Nonprofit Accounting: Protect Your Mission and Funding

Nonprofit accounting protects an organization’s mission and funding by showing donors, grant makers, and the board that every dollar was used as intended. Accurate fund tracking, timely reports, and audit-ready records keep an organization eligible for grants and maintain the trust that donations depend on.

How is nonprofit accounting different?

A nonprofit reports on accountability. Money often arrives with conditions, and the accounting must track each restricted gift or grant separately and report expenses by purpose.

TermWhat it means
Net assets with donor restrictionsFunds that must be used for a purpose or period the donor set
Net assets without donor restrictionsFunds the board can direct where needed
Statement of Financial PositionThe nonprofit version of the Balance Sheet
Statement of ActivitiesThe nonprofit version of the Profit and Loss statement
Statement of Functional ExpensesExpenses reported as program, management, and fundraising
Form 990The annual information return most tax-exempt organizations file with the IRS

How does weak accounting put funding at risk?

  • Grant compliance. Funders can deny reimbursement or ask for money back when spending cannot be tied to the grant budget.
  • Late reports. Missed reporting deadlines can delay payments and hurt renewal.
  • Audit findings. Findings in an audit are visible to funders and can limit future awards.
  • Tax-exempt status. An organization that fails to file its Form 990 series return for three consecutive years loses its exemption automatically.
  • Donor confidence. Unclear reporting makes major donors hesitant to give again.

What should a nonprofit track for every grant?

  • The approved budget by category
  • Spending to date against each category
  • Allowable and unallowable costs
  • Staff time charged to the grant
  • Reporting deadlines and the reports submitted

What should the board see every month?

  1. Statement of Financial Position and Statement of Activities
  2. Budget compared with actual results
  3. Cash on hand, shown as months of operating expenses
  4. Grant spending compared with each grant budget
  5. Restricted and unrestricted balances

How does an organization stay audit-ready?

  • Reconcile every account each month.
  • Keep documentation for every grant expense.
  • Separate duties so that one person does not approve, record, and reconcile the same transaction.
  • Review restricted fund balances monthly.
  • Close the books on a set schedule.

Common questions

What is fund accounting?

Fund accounting is a method that tracks money by its purpose or restriction, so an organization can show how each grant or restricted gift was used.

What is the difference between restricted and unrestricted funds?

Restricted funds must be used for a purpose or time period set by the donor. Unrestricted funds can be used wherever the board decides.

Does a nonprofit need an audit?

It depends on the organization’s size, its funders, and state rules. Many grant makers and some states require an audit above certain revenue or spending levels.

What happens if a nonprofit does not file Form 990?

An organization that does not file the required Form 990 series return for three years in a row automatically loses its federal tax-exempt status.

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About the author. Jacqueline Oberst is the founder of Sunderland Valley Enterprises, a former Chief Financial Officer of two growing companies, a Certified Exit Planning Advisor, and the author of Looks Profitable. Read more about Jacqueline.